Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[2]
| 16S rRNA based LTP_10_2024[7][8][9] |
120 marker proteins based GTDB 10-RS226[10][11][12] |
| Nocardiopsis~ |
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Nocardiopsis mangrovi corrig. Huang et al. 2024 |
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Nocardiopsis sediminis Muangham et al. 2016 |
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Nocardiopsis akesuensis Gao et al. 2016 |
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Nocardiopsis mwathae Akhwale et al. 2016 |
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| Nocardiopsis |
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N. ansamitocini Zhang et al. 2016 |
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N. nikkonensis Yamamura et al. 2010 |
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N. rhizosphaerae Zhang et al. 2016 |
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N. salina Li et al. 2004 |
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N. coralli Li et al. 2021 |
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N. fildesensis Xu et al. 2014 |
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N. algeriensis Bouras et al. 2015 |
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N. alba Grund & Kroppenstedt 1990 |
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N. halotolerans Al-Zarban et al. 2002 |
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N. akebiae Mo et al. 2024 |
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N. dassonvillei (Brocq-Rousseau 1904) Meyer 1976 |
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N. deserti Asem et al. 2020 |
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N. dassonvillei crassaminis Camacho Pozo et al. 2020 |
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N. synnemataformans Yassin et al. 1997 |
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N. aegyptia Sabry et al. 2004 |
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N. eucommiae Mo et al. 2022 |
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N. prasina (Miyashita, Mikami & Arai 1984) Yassin et al. 1997 |
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| Nocardiopsis_C |
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| Nocardiopsis_A |
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| Nocardiopsis |
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"Ca. N. merdipullorum" Gilroy et al. 2021 |
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N. umidischolae |
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N. halotolerans |
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Glycomyces fuscus Han et al. 2014 |
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N. dassonvillei [N. deserti] |
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N. alborubida corrig. Grund & Kroppenstedt 1990 |
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N. synnemataformans |
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Unassigned species:
- "N. benisuefensis" Hozzein 2003c
- "N. bonnevillensis" Scott et al. 2025
- "N. lambiniae" Nouioui et al. 2024
- "N. oceanisediminis" Kim et al. 2025
- N. protaetiae Liu et al. 2025
- "N. synnemasporogenes" El-Naggar 2014 em. Nouioui et al. 2018
- "N. tangguensis" Lu et al. 2002
- "N. viridoflava" Xie, Liu & Wang 2002b
- "N. yanglingensis" Yan et al. 2011
References
- 1 2 3 Nocardiopsis in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1–D12. doi:10.1093/nar/gkaf1110.
- 1 2 C.L. Schoch; et al. "Nocardiopsis". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.
- 1 2 "Nocardiopsis". uniprot.org. Retrieved 2016-08-18.
- ↑ Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.
- ↑ Engelhardt, K.; Degnes, K. F.; Kemmler, M.; Bredholt, H.; Fjaervik, E.; Klinkenberg, G.; Sletta, H.; Ellingsen, T. E.; Zotchev, S. B. (18 June 2010). "Production of a New Thiopeptide Antibiotic, TP-1161, by a Marine Nocardiopsis Species". Applied and Environmental Microbiology. 76 (15): 4969–4976. Bibcode:2010ApEnM..76.4969E. doi:10.1128/AEM.00741-10. PMC 2916467. PMID 20562278.
- ↑ Horikoshi, Koki, ed. (2011). Extremophiles handbook. Tokyo: Springer. ISBN 978-4-431-53897-4.
- ↑ "The LTP". Retrieved 10 December 2024.
- ↑ "LTP_all tree in newick format". Retrieved 10 December 2024.
- ↑ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ↑ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
- ↑ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
- ↑ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.
Further reading
- Li, Hong-Wei; Zhi, Xiao-Yang; Yao, Ji-Cheng; Zhou, Yu; Tang, Shu-Kun; Klenk, Hans-Peter; Zhao, Jiao; Li, Wen-Jun; Brochier-Armanet, Celine (23 April 2013). "Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability". PLOS ONE. 8 (4) e61528. Bibcode:2013PLoSO...861528L. doi:10.1371/journal.pone.0061528. PMC 3634020. PMID 23626695.
- Zhang, Haibo; Saurav, Kumar; Yu, Ziquan; Mándi, Attila; Kurtán, Tibor; Li, Jie; Tian, Xinpeng; Zhang, Qingbo; Zhang, Wenjun; Zhang, Changsheng (24 June 2016). "α-Pyrones with Diverse Hydroxy Substitutions from Three Marine-Derived Nocardiopsis Strains". Journal of Natural Products. 79 (6): 1610–1618. Bibcode:2016JNAtP..79.1610Z. doi:10.1021/acs.jnatprod.6b00175. hdl:2437/229054. PMID 27300427.
- Pan, HQ; Zhang, DF; Li, L; Jiang, Z; Cheng, J; Zhang, YG; Wang, HF; Hu, JC; Li, WJ (October 2015). "Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea". International Journal of Systematic and Evolutionary Microbiology. 65 (10): 3384–91. doi:10.1099/ijsem.0.000425. PMID 26297579.
- Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.
- Patrice, Dion; Chandra Shekhar, Nautiyal (2007). Microbiology of Extreme Soils. Springer Science & Business Media. ISBN 978-3-540-74231-9.
- Horikoshi, Koki (1999). Alkaliphiles. Tokyo: Kodansha. ISBN 90-5702-458-6.
- Rahman, Atta-ur-, ed. (1997). Studies in Natural Products Chemistry Indices Part A. Burlington: Elsevier. ISBN 0-08-048120-5.
- Glasby, John S. (1992). Dictionary of antibiotic-producing organisms (1. publ. ed.). New York: Ellis Horwood. ISBN 0-13-210584-5.
- Staley, Don J. Brenner ... ed. Ed. board James T. (2005). Bergey's manual of systematic bacteriology (2nd ed.). New York: Springer. ISBN 0-387-28021-9.
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- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Metamonada
- Discoba
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Amorphea
- Amoebozoa
- Opisthokonta
- Animalia
- Fungi
- Mesomycetozoea)
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Candidate Phyla Radiation |
- "Elulimicrobiota"
- Minisyncoccota
- "Absconditibacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Baikalibacteria"
- "Dojkabacteriia"
- "Doudnabacteria"
- "Gracilibacteriia"
- "Howlettbacteria"
- "Katanibacteriia"
- "Kazanbacteria"
- "Microgenomatia"
- Minisyncoccia
- "Patescibacteriia"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
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| | | "Synergistetes" | |
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| "Thermocalda" | |
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| | | "Cyanoprokaryota" |
- Cyanobacteriota
- "Margulisiibacteriota"
- "Marinamargulisbacteria"
- "Riflemargulisbacteria"
- "Saganbacteria"
- "Termititenacia"
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| "Firmicutes" |
- Bacillota
- Bacillota D
- Bacillota E
- "Fermentithermobacillia"
- Sulfobacillia
- Symbiobacteriia
- Thermaerobacteria
- Bacillota G
- "Hydrogenisporia"
- Limnochordia
- "Clostridiota"
- "Clostridiia"
- "Thermoanaerobacteria"
- Thermosediminibacteria
- "Desulfotomaculota"
- "Carboxydocellia"
- "Carboxydothermia"
- "Dehalobacteriia"
- Desulfitobacteriia
- Desulfotomaculia
- "Moorellia"
- Peptococcia
- Syntrophomonadia
- "Thermacetogeniia"
- Thermincolia
- "Halanaerobiaeota"
- "Selenobacteria"
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| Incertae sedis |
- "Qinglongiota"
- "Salinosulfoleibacteria"
- "Teskebacteria"
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Taxon identifiers |
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| Nocardiopsis | |
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