Riboswitch s0670

riboswitch_s0670
Predicted secondary structure and sequence conservation of riboswitch_s0670
Identifiers
Symbolriboswitch_s0670
RfamXXXX
Other data
RNA typeCis-reg; Riboswitch;
DomainBacteria
PDB structuresPDBe

Riboswitch_s0670 is a probable SAM riboswitch identified by RNA deep sequencing of Clostridioides difficile 630.[1] Close matches are found with members of the SAM-I-IV-variant family, however s0670 and several sequences in this alignment do not match any Rfam family. Downstream genes are either S-adenosylmethionine synthetase (most frequently), S-ribosylhomocysteine lyase, O-acetylhomoserine (thiol)-lyase O-acetylhomoserine sulfhydrylase, homoserine dehydrogenase.

References

  1. ↑ Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, Sismeiro O; et al. (2013). "Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile". PLOS Genet. 9 (5) e1003493. doi:10.1371/journal.pgen.1003493. PMC 3649979. PMID 23675309.{{cite journal}}: CS1 maint: multiple names: authors list (link)
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